Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LAML rs11123469 chr2:118844183 C/T 0.000143 111 1 7.17 19.23 KM Plot
LAML rs11127383 chr2:3203852 A/G 7.67E-5 111 0 13.1 15.23 KM Plot
LAML rs11127384 chr2:3203977 C/T 0.000125 110 0 11.65 15.23 KM Plot
LAML rs11127386 chr2:3217777 A/C 5.94E-5 111 0 14.7 15.2 KM Plot
LAML rs11127387 chr2:3221360 C/T 6.24E-5 110 0 14.7 15.17 KM Plot
LAML rs111317273 chr19:33922096 G/A 1.9E-5 111 16.77 10.67 3 KM Plot
LAML rs111404278 chr10:134970276 C/G 5.48E-5 106 16.27 20.27 3 KM Plot
LAML rs111454095 chr7:105154861 C/T 0.00015 110 16.17 13.1 0 KM Plot
LAML rs111556560 chr13:114623063 G/A 6.13E-7 109 13.1 19.33 0.5 KM Plot
LAML rs111588144 chr2:174131525 A/G 0.000151 110 16.3 11.67 0 KM Plot
LAML rs11168600 chr12:48886097 A/G 0.000126 111 0 10.13 16.23 KM Plot
LAML rs111778698 chr6:134303463 A/G 0.000172 109 16.17 10.13 1 KM Plot
LAML rs111819759 chr4:2244322 C/CG 0.000112 109 16.77 7.13 20.75 KM Plot
LAML rs111821611 chr19:12554633 G/A 1.05E-5 111 6.63 21.82 13.1 KM Plot
LAML rs112047094 chr13:114633822 G/A 6.12E-7 109 12.18 19.33 0.5 KM Plot